Bionano MINT server


MINT project is hosted on GitHub, where it can be downloaded in its newest version:

MINT user manual: MINT_manual.pdf

MINT standalone version analyzes many conformations:
finds residues forming helices, pseudo-knots and other motifs, as well as outputs frame numbers and the percentage of time particular conformations appeared in the trajectory.

computes clusters of secondary structure motifs and average motifs along with two-dimensional (2D) and three-dimensional (3D) contacts.

recognizes all Watson-Crick and non-Watson-Crick base pairs and fings frame numbers in which a helix was present, as well as the percentage of the trajectory time the helix occurred.

computes the average number of Watson-Crick and non-Watson Crick hydrogen bonds per nucleotide.

estimates the average stacking energy - van der Waals and electrostatic energies and their sum per nucleotide.

calculate the average secondary structure.

provides inputs for 2D and 3D visualizations of the above computed parameters.